A B C D E F G H I J K L M N O P Q R S T U V W Z _

G

GAtom - Class in tuffy.infer.ds
A ground atom.
GAtom(int) - Constructor for class tuffy.infer.ds.GAtom
Constructor for GAtom.
gatom2key - Variable in class tuffy.infer.ds.KeyBlock
 
GAtomTest - Class in tuffy.test
Testing class for GAtom object.
GAtomTest() - Constructor for class tuffy.test.GAtomTest
 
gauss_seidel_infer_rounds - Static variable in class tuffy.util.Config
 
gc - Static variable in class tuffy.test.GClauseTest
 
GClause - Class in tuffy.infer.ds
A ground clause.
GClause() - Constructor for class tuffy.infer.ds.GClause
 
GClauseTest - Class in tuffy.test
Testing class for GClause object.
GClauseTest() - Constructor for class tuffy.test.GClauseTest
 
generateSQL() - Method in class tuffy.mln.Clause
Generate the SQL command for grounding this clause.
Generic - Static variable in class tuffy.mln.Type
Built-in types
get(int) - Method in class tuffy.mln.Tuple
Return the i-th element.
get(String) - Method in class tuffy.util.Settings
 
getAllDatalogRules() - Method in class tuffy.mln.MarkovLogicNetwork
 
getAllFreeBinding() - Method in class tuffy.ra.ConjunctiveQuery
 
getAllNormalizedClauses() - Method in class tuffy.mln.MarkovLogicNetwork
Return all normalized clauses.
getAllPred() - Method in class tuffy.mln.MarkovLogicNetwork
Return the set of all predicates.
getAllPredOrderByName() - Method in class tuffy.mln.MarkovLogicNetwork
 
getAllUnnormalizedClauses() - Method in class tuffy.mln.MarkovLogicNetwork
Return all unnormalized clauses as read from the input file.
getArgPositionByName(String) - Method in class tuffy.mln.Predicate
Return the position of the given argument name.
getArgs() - Method in class tuffy.mln.Predicate
Return argument names of this predicate.
getArgs() - Method in class tuffy.ra.Expression
 
getArgTypes() - Method in class tuffy.ra.Function
 
getArguments() - Method in class tuffy.ra.AtomEx
 
getAtomNeighbors(int) - Method in class tuffy.infer.MRF
For research experiments! Get all neighboring atoms of one atom.
getBaseMem() - Static method in class tuffy.util.DebugMan
 
getBlockMates(GAtom) - Method in class tuffy.infer.ds.KeyBlock
 
getBool(String) - Method in class tuffy.util.Settings
 
getBoundedSQL(HashSet<String>) - Method in class tuffy.ra.ConjunctiveQuery
 
getBufferedReaderMaybeGZ(String) - Static method in class tuffy.util.FileMan
 
getBufferedWriterMaybeGZ(String) - Static method in class tuffy.util.FileMan
 
getBuiltInFunctionByName(String) - Static method in class tuffy.ra.Function
 
getBuiltInPredByName(String) - Static method in class tuffy.mln.Predicate
Return the predicate object with the name as the argument string.
getClauseById(int) - Method in class tuffy.mln.MarkovLogicNetwork
Get the clause object by integer ID.
getCompByID(int) - Method in class tuffy.ground.partition.PartitionScheme
 
getCompByPartID(int) - Method in class tuffy.ground.partition.PartitionScheme
 
getComponent() - Method in class tuffy.infer.InferComponent
 
getComponents() - Method in class tuffy.ground.partition.Bucket
 
getConnection() - Method in class tuffy.db.RDB
Return the database connection.
getConstaintStringAsLits() - Method in class tuffy.mln.Clause
 
getConstraint() - Method in class tuffy.ra.ConjunctiveQuery
 
getConstraint(HashSet<String>) - Method in class tuffy.ra.ConjunctiveQuery
 
getConstraints() - Method in class tuffy.mln.Clause
 
getCoreAtoms() - Method in class tuffy.infer.MRF
 
getCost() - Method in class tuffy.infer.InferBucket
Get the cost after inference.
getCost() - Method in class tuffy.infer.InferComponent
 
getCost() - Method in class tuffy.infer.MRF
 
getCqById(int) - Static method in class tuffy.ra.ConjunctiveQuery
 
getDateTime() - Static method in class tuffy.util.Timer
 
getDB() - Method in class tuffy.mln.MarkovLogicNetwork
 
getDependentAttrPositions() - Method in class tuffy.mln.Predicate
 
getDependentAttrs() - Method in class tuffy.mln.Predicate
Get attributes whose value depend on other attributes in any possible world.
getDescription() - Method in class tuffy.parse.MLNLexer.DFA21
 
getDescription() - Method in class tuffy.parse.MLNLexer.DFA23
 
getDescription() - Method in class tuffy.parse.MLNLexer.DFA8
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA1
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA11
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA18
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA22
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA26
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA29
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA30
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA40
 
getDescription() - Method in class tuffy.parse.MLNParser.DFA45
 
getDouble(String) - Method in class tuffy.util.Settings
 
getFileSize(String) - Static method in class tuffy.util.FileMan
 
getFlipRate() - Method in class tuffy.util.Timer.RunStat
 
getFlipSequence(GAtom) - Method in class tuffy.infer.MRF
 
getFunction() - Method in class tuffy.ra.Expression
 
getFunctionByName(String) - Method in class tuffy.mln.MarkovLogicNetwork
Get a function by its name; can be built-in.
getGradientAndD(MRF) - Method in class tuffy.learn.DNLearner
Calculate the gradient and H^(-1)g by filling in DNLearner.currentD and DNLearner.currentGradient.
getGrammarFileName() - Method in class tuffy.parse.ConfigLexer
 
getGrammarFileName() - Method in class tuffy.parse.ConfigParser
 
getGrammarFileName() - Method in class tuffy.parse.MLNLexer
 
getGrammarFileName() - Method in class tuffy.parse.MLNParser
 
getGroundTime() - Method in class tuffy.util.Timer.RunStat
 
getGZIPVariant(String) - Static method in class tuffy.util.FileMan
 
getId() - Method in class tuffy.mln.Clause
Get clause ID.
getID() - Method in class tuffy.mln.MarkovLogicNetwork
 
getID() - Method in class tuffy.mln.Predicate
Return the assigned ID of this predicate in its parent MLN.
getID() - Method in class tuffy.ra.ConjunctiveQuery
 
getIdx() - Method in class tuffy.mln.Literal
Return the assigned index of this literal in its parent clause.
getInitStrategy() - Method in class tuffy.infer.MRF
 
getInt(String) - Method in class tuffy.util.Settings
 
getJoinSQL(HashSet<String>) - Method in class tuffy.ra.ConjunctiveQuery
 
getKeyAttrPositions() - Method in class tuffy.mln.Predicate
 
getKeyAttrs() - Method in class tuffy.mln.Predicate
Get attributes that form a possible world key.
getLastUpdateRowCount() - Method in class tuffy.db.RDB
Return the number of affected tuples from last update.
getLines(String) - Static method in class tuffy.util.FileMan
Reads lines from a text file.
getList() - Method in class tuffy.util.HashArray
 
getLiteralsOfPredicate(Predicate) - Method in class tuffy.mln.Clause
Return the member literals of a particular predicate.
getLoadingDir() - Static method in class tuffy.util.Config
 
getLog() - Static method in class tuffy.util.DebugMan
 
getLogOddsWeight(double) - Static method in class tuffy.util.MathMan
 
getMLN() - Method in class tuffy.ground.Grounding
Get the MLN object used for grounding.
getMLN() - Method in class tuffy.infer.MRF
 
getMRFByPartID(int) - Method in class tuffy.ground.partition.PartitionScheme
 
getName() - Method in class tuffy.mln.Clause
Return the assigned name of this clause.
getName() - Method in class tuffy.mln.Predicate
Return the name of this predicate.
getName() - Method in class tuffy.ra.Function
 
getName() - Method in class tuffy.util.UnionFind.Record
 
getNetTuplePrior() - Method in class tuffy.ra.ConjunctiveQuery
 
getNonSymbolicType() - Method in class tuffy.mln.Type
 
getNonSymbolicTypeInSQL() - Method in class tuffy.mln.Type
 
getNumAtoms() - Method in class tuffy.ground.Grounding
Return the number of active atoms in the grounding result.
getNumAtoms() - Method in class tuffy.ground.partition.PartitionScheme
 
getNumBuckets() - Method in class tuffy.infer.InferPartitioned
 
getNumClauses() - Method in class tuffy.ground.Grounding
Return the number of active clauses in the grounding result.
getNumClusters() - Method in class tuffy.util.UnionFind
 
getNumThreads() - Method in class tuffy.infer.InferBucket
 
getNumThreads() - Static method in class tuffy.util.Config
 
getOrCreateTypeByName(String) - Method in class tuffy.mln.MarkovLogicNetwork
Return the type of a given name; create if this type does not exist.
getParent() - Method in class tuffy.util.UnionFind.Record
 
getParentDir(String) - Static method in class tuffy.util.FileMan
 
getPartitionByID(int) - Method in class tuffy.ground.partition.PartitionScheme
 
getPartitionMap() - Method in class tuffy.util.UnionFind
 
getPartitions() - Method in class tuffy.ground.partition.Bucket
 
getPartitionScheme() - Method in class tuffy.infer.InferPartitioned
 
getPeakMem() - Static method in class tuffy.util.DebugMan
 
getPgFunction() - Method in class tuffy.ra.Function
Get the corresponding function name inside PgSQL.
getPred() - Method in class tuffy.mln.Literal
Return the predicate of this literal.
getPred() - Method in class tuffy.ra.AtomEx
Returns the predicate of this literal.
getPredByName(String) - Method in class tuffy.mln.MarkovLogicNetwork
Return the predicate of the given name; null if such predicate does not exist.
getPrepareStatement(String) - Method in class tuffy.db.RDB
Return a prepared statement of the given SQL statement.
getQueryAtoms() - Method in class tuffy.mln.Predicate
Return query atoms of this predicate.
getRandomElement() - Method in class tuffy.util.HashArray
 
getRDB() - Method in class tuffy.mln.MarkovLogicNetwork
Returns the RDB used by this MLN.
getRDBbyConfig() - Static method in class tuffy.db.RDB
Attempt to establish the connection as specified in the (deault) configuration.
getRDBbyConfig(String) - Static method in class tuffy.db.RDB
 
getRecords() - Method in class tuffy.util.UnionFind
 
getReferencedPredicates() - Method in class tuffy.mln.Clause
Return the set of predicates referenced by this clause.
getRegLiterals() - Method in class tuffy.mln.Clause
Return the list of non-built-in literals (i.e., regular literals).
getRelAct() - Method in class tuffy.mln.Predicate
Return the name of relational table containing the ID of active atoms associated with this predicate.
getRelatedClauses() - Method in class tuffy.mln.Predicate
Return clauses referencing this predicate.
getRelevantClauses() - Method in class tuffy.mln.MarkovLogicNetwork
Returns the set of relevant clauses.
getRelName() - Method in class tuffy.mln.Predicate
Return the relational table name of this predicate..
getRelName() - Method in class tuffy.mln.Type
Return the name of the DB relational table of this type.
getRetType() - Method in class tuffy.ra.Function
Get return type
getRoot(E) - Method in class tuffy.util.UnionFind
 
getRoots() - Method in class tuffy.util.UnionFind
 
getSense() - Method in class tuffy.mln.Literal
Return true if this is a positive literal.
getSequenceCurValue(String) - Method in class tuffy.db.RDB
Read the current value of a sequence.
getSignature() - Method in class tuffy.mln.Clause
Return the "signature" of this clause.
getSimpleInferenceResult() - Method in class tuffy.test.GroundingTest
 
getSimpleInferenceResult() - Method in class tuffy.test.InferenceTest
 
getSize() - Method in class tuffy.util.UnionFind.Record
 
getSpecText() - Method in class tuffy.mln.Clause
 
getSpecTextFlat() - Method in class tuffy.mln.Clause
 
getStats() - Method in class tuffy.ground.partition.PartitionScheme
Show stats about this partitioning scheme.
getString(String) - Method in class tuffy.util.Settings
 
getStringForm(boolean) - Method in class tuffy.ra.Expression
Compute the SQL representation of this expression.
getSymbolID(String, Type) - Method in class tuffy.mln.MarkovLogicNetwork
Return assigned ID of a constant symbol.
getTask() - Method in class tuffy.infer.InferBucket
Get the next unprocessed component in the queue
getTerms() - Method in class tuffy.mln.Literal
Return the list of terms in this literal.
getTextContent(String) - Static method in class tuffy.util.FileMan
Reads content from a text file.
getTokenNames() - Method in class tuffy.parse.ConfigParser
 
getTokenNames() - Method in class tuffy.parse.MLNParser
 
getTokens(String) - Method in class tuffy.parse.InputParser
 
getTree() - Method in class tuffy.parse.ConfigParser.config_return
 
getTree() - Method in class tuffy.parse.ConfigParser.state_return
 
getTree() - Method in class tuffy.parse.MLNParser.atom_return
 
getTree() - Method in class tuffy.parse.MLNParser.atomicExpression_return
 
getTree() - Method in class tuffy.parse.MLNParser.boolConjunction_return
 
getTree() - Method in class tuffy.parse.MLNParser.boolConjunctionElement_return
 
getTree() - Method in class tuffy.parse.MLNParser.boolExpression_return
 
getTree() - Method in class tuffy.parse.MLNParser.datalogRule_return
 
getTree() - Method in class tuffy.parse.MLNParser.definitions_return
 
getTree() - Method in class tuffy.parse.MLNParser.evidence_return
 
getTree() - Method in class tuffy.parse.MLNParser.evidenceList_return
 
getTree() - Method in class tuffy.parse.MLNParser.existQuan_return
 
getTree() - Method in class tuffy.parse.MLNParser.expression_return
 
getTree() - Method in class tuffy.parse.MLNParser.foclause_return
 
getTree() - Method in class tuffy.parse.MLNParser.funcArgument_return
 
getTree() - Method in class tuffy.parse.MLNParser.funcExpression_return
 
getTree() - Method in class tuffy.parse.MLNParser.functionalAtom_return
 
getTree() - Method in class tuffy.parse.MLNParser.functionalDependency_return
 
getTree() - Method in class tuffy.parse.MLNParser.functionalDependencyItem_return
 
getTree() - Method in class tuffy.parse.MLNParser.hardRule_return
 
getTree() - Method in class tuffy.parse.MLNParser.literal_return
 
getTree() - Method in class tuffy.parse.MLNParser.mathComparison_return
 
getTree() - Method in class tuffy.parse.MLNParser.mathExpression_return
 
getTree() - Method in class tuffy.parse.MLNParser.mathFactor_return
 
getTree() - Method in class tuffy.parse.MLNParser.mathTerm_return
 
getTree() - Method in class tuffy.parse.MLNParser.mlnRule_return
 
getTree() - Method in class tuffy.parse.MLNParser.predArg_return
 
getTree() - Method in class tuffy.parse.MLNParser.query_return
 
getTree() - Method in class tuffy.parse.MLNParser.queryCommaList_return
 
getTree() - Method in class tuffy.parse.MLNParser.queryList_return
 
getTree() - Method in class tuffy.parse.MLNParser.ruleList_return
 
getTree() - Method in class tuffy.parse.MLNParser.schema_return
 
getTree() - Method in class tuffy.parse.MLNParser.schemaConstraint_return
 
getTree() - Method in class tuffy.parse.MLNParser.schemaList_return
 
getTree() - Method in class tuffy.parse.MLNParser.scopingRule_return
 
getTree() - Method in class tuffy.parse.MLNParser.softRule_return
 
getTree() - Method in class tuffy.parse.MLNParser.term_return
 
getTreeAdaptor() - Method in class tuffy.parse.ConfigParser
 
getTreeAdaptor() - Method in class tuffy.parse.MLNParser
 
getTypeAt(int) - Method in class tuffy.mln.Predicate
Return the type of the k-th argument.
getUniqueFileName() - Static method in class tuffy.util.FileMan
 
getUniqueFileNameAbsolute() - Static method in class tuffy.util.FileMan
 
getUniqVarName() - Static method in class tuffy.util.StringMan
 
getVars() - Method in class tuffy.mln.Literal
Return the set of variable names in this literal.
getVars() - Method in class tuffy.ra.AtomEx
Returns the set of variable names in this literal.
getVars() - Method in class tuffy.ra.Expression
Get the variables referenced by this expression.
getVarWeight() - Method in class tuffy.mln.Clause
Get the variable in this clause that is used as clause weights
getWeight() - Method in class tuffy.mln.Clause
Return the weight of this clause.
getWeight() - Method in class tuffy.ra.ConjunctiveQuery
 
getWeight() - Method in class tuffy.util.UnionFind.Record
 
getWeightExp() - Method in class tuffy.mln.Clause
Return the expression of clause weights to be used in SQL.
getWorkingDir() - Static method in class tuffy.util.Config
 
GreaterThan - Static variable in class tuffy.ra.Function
 
GreaterThanEq - Static variable in class tuffy.ra.Function
 
ground() - Method in class tuffy.main.Infer
Ground the MLN into an MRF.
groundAndStoreAtom(Atom) - Method in class tuffy.mln.Predicate
Ground an atom and store the result in the database.
Grounding - Class in tuffy.ground
This class handles the grounding process of MLN inference/learning with SQL queries.
Grounding(MarkovLogicNetwork) - Constructor for class tuffy.ground.Grounding
Create a grounding worker for an MLN.
grounding - Variable in class tuffy.infer.InferPartitioned
 
grounding - Variable in class tuffy.infer.PGInfer
Deprecated.  
grounding - Variable in class tuffy.main.Infer
Grounding worker.
GroundingTest - Class in tuffy.test
Testing class for grounding.
GroundingTest() - Constructor for class tuffy.test.GroundingTest
 
groundSec - Variable in class tuffy.util.Timer.RunStat
 
groundSize() - Method in class tuffy.mln.Atom
Return the number of grounded atoms when grounding this atom.
groupPartitionsIntoBuckets() - Method in class tuffy.infer.InferPartitioned
Group components/partitions to enable efficient batch loading and parallel inference.
guid - Static variable in class tuffy.ground.partition.Bucket
 

A B C D E F G H I J K L M N O P Q R S T U V W Z _